SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

Nature·Aug 26

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1

CellLoop: Identifying single-cell 3D genome chromatin loops

Nature·Apr 6

2

Every gene everywhere all at once: High-precision measurement of 3D chromosome architecture with single-cell Hi-C

Frontiers·Oct 5

3

SnapFISH: a computational pipeline to identify chromatin loops from multiplexed DNA FISH data

Nature·Aug 12

4

LASCA: loop and significant contact annotation pipeline

Nature·Mar 18

5

Hi-Compass: a depth-aware deep learning framework for predicting cell-type-specific 3D genome organization from single-cell to spatial resolution

Nature·Apr 14

6

HaploC-tools reveal haplotype-specific chromosome conformation and chromatin states

Nature·Apr 25

7

Improved cohesin HiChIP protocol and bioinformatic analysis for robust detection of chromatin loops and stripes

Nature·Mar 14

8

Identification of significant chromatin contacts from HiChIP data by FitHiChIP

Nature·Sep 17